species:   Rhsol
pid:       PID0499
parent:    Rhi-milR-69
paralog:   
locus:     KB317833.1:10762-10861
matures:   ['GAGGCCUGUAGUUGUUGGAUGGG', 'CGUCCAACAAGGGAUUCAA']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317833.1:10762-10861

4 out of bounds
13 alignments
11 proper strand
11 stranded perfect matches

                      **********************                    **************************          
CUGGCCUUGCGGUCAGUAAUCACCCGUCCAACAAGGGAUUCAAUUUUGGUGACGUUGACAACCUCUUGAGGCCUGUAGUUGUUGGAUGGGUUGUGGUAUU
((((((....)))))).....((((((((((((((((..((((....(((..........)))..))))..)))....))))))))))))).........
-------------------------------------------------------------------GAGGCCUGUAGUUGUUGGAUGGG---------- l=23 a=0 c
------------------------CGUCCAACAAGGGAUUCAA--------------------------------------------------------- l=19 a=0 c*
------------------------------------------------------------------UGAGGCCUGUAGUUGUUGGAUGGG---------- l=24 a=10 ma
------------------------CGUCCAACAAGGGAUUCAAU-------------------------------------------------------- l=20 a=0 ma*

-------------------------------------------------------------------------UGUAGUUGUUGGAUGGGUUGUGG---- l=23 a=1 
------------------------------------------------------------------UGAGGCCUGUAGUUGUUGGAUGGG---------- l=24 a=10 (ma)

mb-01011
ax-1011111
ku-01
ss-111111111010
fn-111
